How to get mupen64+ to run?

I believe that in first boot it runs the auto expand script which may take a while. I will also download and test it for you.

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Only because your same issues were cross posted across numerous posts, I am just going to post your reply here, and realisation; for future readers who may come across these posts.

The same user above has made another thread, continuing the same problem as above. Here is the link, for future people following this thread.

They ended up resolving it, using Putty.